CalCOFI.io CalCOFI.io open data ecosystem

Datasets

Who collected what, with its coverage, every endpoint, the licence and how to cite it.

20 in the release · 15 held · 32 reference rows · v2026.10.21

What this is

Every dataset CalCOFI holds: the 20 in the integrated database, each with its coverage, every endpoint it can be reached through and how to cite it, and the 15 holdings that are not in the database yet. One page per dataset. The machine-readable catalog is data.json and sitemap.xml.

Rows open to the description, what is in them and the ways in.

Biology

13 datasets · what lives in the water column: counted, measured, identified
Euphausiids (Krill) Euphausiids (Krill) · CCE-LTER 1951–2019101 k obsprovider terms ↗

CCE-LTER Euphausiid Abundance. Species- and life-stage-resolved euphausiid (krill) abundance from CalCOFI / CCE-LTER net tows (BTEDB export), 1951-present, one row per tow x species x life stage.

Euphausiids (Krill)
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Euphausiid species and stages from bongo tows.

37 taxa · Euphausia pacifica, Hansarsia difficilis, Thysanoessa gregaria, Nyctiphanes simplex, Stylocheiron longicorne, Euphausia recurva, Euphausia gibboides, Stylocheiron affine …1951–2019 · 124 stationsin the release since v2026.06.08 · ingested

Dataset pageExplorerOriginal at EDIERDDAPAs JSON

CUFES Fish Eggs Fish Eggs & Larvae · NOAA SWFSC 1996–2022550 k obsprovider terms ↗

CalCOFI Underway CUFES Fish Eggs. Continuous Underway Fish Egg Sampler (CUFES) egg counts (sardine, anchovy, jack mackerel, hake, squid, other) and eggs per cubic metre pumped, from CalCOFI cruises since 1996.

Fish Eggs & Larvae
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Ichthyoplankton — fish eggs and larvae from oblique and vertical tows and the continuous underway egg sampler.

6 taxa · Sardinops sagax, Engraulis mordax, Teleostei, Merluccius productus, Trachurus symmetricus, Abraliopsis felis1996–2022 · 137 stationsin the release since v2026.06.08 · ingested

Dataset pageExplorerOriginal at NOAA ERDDAPERDDAPAs JSON

Ichthyoplankton Fish Eggs & Larvae · NOAA SWFSC 1951–2023488 k obsunstated

SWFSC Ichthyoplankton. Ichthyoplankton (fish eggs and larvae) collected by bongo and manta net tows on CalCOFI cruises, processed by SWFSC.

Fish Eggs & Larvae
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Ichthyoplankton — fish eggs and larvae from oblique and vertical tows and the continuous underway egg sampler.

992 taxa · Teleostei, Engraulis mordax, Sebastes, Vinciguerria lucetia, Merluccius productus, Triphoturus mexicanus, Sardinops sagax, Protomyctophum crockeri …1951–2023 · 215 stationsin the release since v2026.05.19 · published

Dataset pageExplorerOriginal at fisheries.noaa.govERDDAPAs JSON

2022 Vertebrate eDNA Genomics & eDNA · CalCOFI 2022148 obsCC BY 4.0

CalCOFI October 2022 Vertebrate eDNA. eDNA metabarcoding survey of vertebrates from water samples collected during the October 2022 CalCOFI cruise.

Genomics & eDNA
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Metabarcoding and environmental DNA — ASV tables, eDNA-derived abundance and density.

19 taxa · Delphinus delphis, Delphinus, Engraulis mordax, Cololabis saira, Leuroglossus, Coryphaena hippurus, Megaptera novaeangliae, Tursiops truncatus …2022 · 13 stationsin the release since v2026.10.05 · validated

Dataset pageExplorerOriginal at GBIFAs JSON

Mesopelagic Fish Mesopelagic Fish · SIO 2010–20121,393 obsCC BY 4.0

UCSD SIO Mesopelagic Fish. Species-resolved mesopelagic fish counts (90 named species + 1 unidentified-fish catch-all) from MOHT (Matsuda-Oozeki-Hu Trawl) micronekton net tows, 7 CalCOFI cruises 2010-2012, all on RV New Horizon (NODC 32NM).

Mesopelagic Fish
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Midwater trawl catches of mesopelagic fishes.

87 taxa · Triphoturus mexicanus, Lampanyctus ritteri, Diaphus theta, Stenobrachius leucopsarus, Ceratoscopelus townsendi, Symbolophorus californiensis, Argyropelecus sladeni, Idiacanthus antrostomus …2010–2012 · 44 stationsin the release since v2026.08.02 · ingested

Dataset pageExplorerOriginal at UC San Diego LibraryERDDAPAs JSON

Phytoplankton Phytoplankton · CalCOFI 156 k obsCC0 · public domain

CalCOFI Phytoplankton (Venrick). Abundance and species composition of phytoplankton (385 taxonomic categories) in the California Current, 1996-2022, by inverted-microscope counts (E.

Phytoplankton
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Phytoplankton counts by taxon or functional group, and imaging flow cytometry (IFCB).

305 taxa · Oxytoxum, Bacillariophyceae, Nitzschia, Prorocentrum, Dinophysis, Chaetoceros, Protoperidinium, Tripos …in the release since v2026.06.08 · ingested

Dataset pageExplorerOriginal at EDIERDDAPAs JSON

Picoplankton & Bacteria Picoplankton & Bacteria · CCE-LTER 2004–202361 k obsunstated

Picoplankton and Bacteria Abundance (CalCOFI Cruise). Picophytoplankton (Prochlorococcus, Synechococcus, picoeukaryotes) and heterotrophic bacteria abundances analyzed by flow cytometry (FCM) from CCE-CalCOFI Augmented cruises in the California Current System, 2004-2023 (ongoing).

Picoplankton & Bacteria
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Picoplankton and bacterioplankton abundances by flow cytometry.

4 taxa · Synechococcus, Prochlorococcus …2004–2023 · 71 stationsin the release since v2026.07.30 · ingested

Dataset pageExplorerOriginal at DataZooERDDAPAs JSON

Seabirds & Marine Mammals Seabirds & Marine Mammals · Farallon Institute 1987–202270 k obsCC BY 4.0

CalCOFI Bird & Mammal Census. Bird and mammal observations along CalCOFI (and NMFS, CPR) cruise transects, 1987-present.

Seabirds & Marine Mammals
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Strip-transect counts of seabirds and marine mammals along the cruise track.

131 taxa · Larus occidentalis, Hydrobates leucorhous, Aves, Ardenna grisea, Larus californicus, Phalaropus fulicarius, Ardenna creatopus, Ptychoramphus aleuticus …1987–2022 · 115 stationsin the release since v2026.08.02 · ingested

Dataset pageExplorerOriginal at NOAA ERDDAPERDDAPAs JSON

Dungeness Crab Megalopae Zooplankton · CDFW 1984–20141,456 obsCC BY 4.0

CDFW Dungeness Crab Megalopae. Dungeness crab (Metacarcinus magister) megalopae and larval decapods picked from archived CalCOFI oblique-tow plankton samples, examined for the California Department of Fish and Wildlife.

Zooplankton
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Net-tow zooplankton: displacement volume, imaged and identified taxa, decapod larvae.

3 taxa · Decapoda, Metacarcinus magister, Cancridae1984–2014 · 59 stationsin the release since v2026.08.14 · ingested

Dataset pageExplorerOriginal at CNRA Open DataERDDAPAs JSON

Phyllosoma (Lobster Larvae) Zooplankton · CalCOFI 1951–20091,859 obsprovider terms ↗

CalCOFI Lobster Phyllosoma. Spiny lobster (Panulirus interruptus) phyllosoma larvae counts by developmental stage from CalCOFI net tows, 1951-2008.

Zooplankton
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Net-tow zooplankton: displacement volume, imaged and identified taxa, decapod larvae.

1 taxa · Panulirus interruptus1951–2009 · 45 stationsin the release since v2026.06.08 · ingested

Dataset pageExplorerOriginal at EDIERDDAPAs JSON

ZooDB (Holoplankton Community) Zooplankton · CCE-LTER 1951–201531 k obsprovider terms ↗

ZooDB Holoplankton Community. Holoplankton abundance and carbon biomass by 33 higher taxa (copepods to family, plus amphipods, chaetognaths, salps, pyrosomes, pteropods, ostracods, foraminifera, radiolaria and more) from CalCOFI net tows, 1951-2021 …

Zooplankton
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Net-tow zooplankton: displacement volume, imaged and identified taxa, decapod larvae.

33 taxa · Salpida, Pyrosomatida, Galatheidae, Radiozoa, Pseudothecosomata, Euthecosomata, Atlantidae, Gymnosomata …1951–2015 · 62 stationsin the release since v2026.06.26 · metadata

Dataset pageExplorerOriginal at ZooDBERDDAPAs JSON

Zooplankton Net Tows Zooplankton · SIO unstated

SIO PIC Zooplankton Net Tows. Zooplankton net-tow sample registry from the SIO Pelagic Invertebrate Collection, scoped to CalCOFI-program expeditions.

Zooplankton
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Net-tow zooplankton: displacement volume, imaged and identified taxa, decapod larvae.

in the release since v2026.08.02 · ingested

Dataset pageOriginal at scripps.ucsd.eduERDDAPAs JSON

ZooScan (Imaged Zooplankton) Zooplankton · CCE-LTER 2005–2026127 k obsprovider terms ↗

ZooScan PRPOOS Zooplankton. Zooplankton abundance, carbon biomass, and size (Feret diameter, individual carbon content) from ZooScan optical imaging of CalCOFI / CCE-LTER PRPOOS net tows on lines 80, 87 and 90, 2005-present, machine-classified …

Zooplankton
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Net-tow zooplankton: displacement volume, imaged and identified taxa, decapod larvae.

23 taxa · Chaetognatha, Oithonidae, Ergasilida, Calanoida, Cnidaria, Appendicularia, Euphausiacea, Gastropoda …2005–2026 · 21 stationsin the release since v2026.06.26 · metadata

Dataset pageExplorerOriginal at ZooScan DBERDDAPAs JSON

Environment

7 datasets · the water itself: its physics, chemistry and the air above it
Carbonate Chemistry / DIC Carbonate System · CalCOFI 1983–202116 k obsCC BY 4.0

CalCOFI DIC. Discrete profile dissolved inorganic carbon (DIC) and total alkalinity (TA) from CalCOFI Niskin bottle samples, quality-controlled using WOCE flagging.

Carbonate System
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Dissolved inorganic carbon, alkalinity, pH and pCO2.

4 variables · alkalinity, ctdtemp_its90, dic, salinity_pss781983–2021 · 51 stationsalso in Physical Oceanography (2)in the release since v2026.05.19 · validated

Dataset pageExplorerOriginal at NCEIERDDAPAs JSON

Underway Meteorological (METS) Meteorology & Sea State · CalCOFI 2004–2022511 k obsunstated

CalCOFI METS (Underway TSG/Meteorology). Shipboard underway thermosalinograph (TSG) and meteorology data, ~1-minute resolution, recorded continuously along the cruise track.

Meteorology & Sea State
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Wind, air temperature, pressure, cloud, visibility, sea state and water colour from the underway METS and ship observations.

17 variables · air_temp_c, atm_pressure_mb, bottom_depth_m, chl_fluor, long_wave_rad, oxygen, par_surf, rel_humidity_pct …2004–2022 · 109 stationsalso in Carbonate System (1) · Physical Oceanography (7) · Productivity & Pigments (2)in the release since v2026.07.30 · metadata

Dataset pageExplorerOriginal at CalCOFI.orgERDDAPAs JSON

Dissolved iron Nutrients & Chemistry · CCE-LTER 2002–2004170 obsprovider terms ↗

CCE-LTER Dissolved Iron (CalCOFI Cruises). Dissolved iron (Fe) concentrations from CalCOFI cruises in the southern California Current System, Nov.

Nutrients & Chemistry
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Nitrate, nitrite, phosphate, silicate and ammonium from bottle samples; particulate and total organic carbon and nitrogen, nitrate isotopes, and trace metals (iron).

1 variable · dissolved_iron2002–2004 · 54 stationsin the release since v2026.10.05 · ingested

Dataset pageExplorerOriginal at EDIAs JSON

Bottle Derived Products Physical Oceanography · CalCOFI 1949–20211.7 M obsunstated

CalCOFI Bottle Derived Hydrographic Products. Hydrographic values DERIVED from the CalCOFI Bottle Database rather than measured: spice (spiciness at 0 dbar) and the TEOS-10 sigma-theta at every bottle with a temperature and a salinity, from the start of the record …

Physical Oceanography
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Temperature, salinity, density, oxygen, pressure and dynamic height from bottles and CTD casts.

2 variables · sigma_theta_teos10, spiciness01949–2021 · 222 stationsin the release since v2026.10.20

Dataset pageExplorerOriginal at CalCOFI.orgAs JSON

CTD Cast Files Physical Oceanography · CalCOFI 1993–202619 M obsunstated

CalCOFI CTD Cast Files. CTD downcast profiles with temperature, salinity, oxygen, fluorescence, and other sensors at standard depths.

Physical Oceanography
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Temperature, salinity, density, oxygen, pressure and dynamic height from bottles and CTD casts.

44 variables · beam_attenuation, btl_ammonium, btl_chlorophyll_a, btl_depth, btl_nitrate, btl_nitrite, btl_phaeopigment, btl_phosphate …1993–2026 · 113 stationsalso in Carbonate System (1) · Nutrients & Chemistry (8) · Productivity & Pigments (7)in the release since v2026.05.19 · ingested

Dataset pageExplorerOriginal at CalCOFI.orgERDDAPAs JSON

CTD Derived Products Physical Oceanography · CalCOFI 1993–20261.4 M obsunstated

CalCOFI CTD Derived Hydrographic Products. Hydrographic products DERIVED from the CalCOFI CTD cast profiles rather than measured: spice (spiciness at 0 dbar, TEOS-10) and the sensor-pair averaged sigma-theta at every published CTD depth; and, per cast, the …

Physical Oceanography
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Temperature, salinity, density, oxygen, pressure and dynamic height from bottles and CTD casts.

9 variables · sigma_theta_ave, spiciness0, mld_temperature_02, mld_sigma_theta_002, chl_max, chl_max_depth, mld_sigma_theta_0125, chl_integrated …1993–2026 · 113 stationsin the release since v2026.10.01

Dataset pageExplorerOriginal at CalCOFI.orgAs JSON

Hydrographic Bottle Physical Oceanography · CalCOFI 1949–202111 M obsunstated

CalCOFI Bottle Database. Hydrographic bottle data including temperature, salinity, oxygen, nutrients, pigments, and C14 from CalCOFI cruises.

Physical Oceanography
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Temperature, salinity, density, oxygen, pressure and dynamic height from bottles and CTD casts.

41 variables · alkalinity_rep1, ammonia, c14_dark, c14_mean, c14_rep1, c14_rep2, chlorophyll_a, dic_rep1 …1949–2021 · 222 stationsalso in Carbonate System (2) · Nutrients & Chemistry (6) · Productivity & Pigments (7)in the release since v2026.05.19 · ingested

Dataset pageExplorerOriginal at CalCOFI.orgERDDAPAs JSON

Holdings 15 not yet in the database

What CalCOFI has or tracks that is not in the integrated database yet. Each has a page that says where it lives today and what it is waiting on.

The reference frame 5 tables · 26 spatial layers · GEBCO 2025 bathymetry

The reference frame

32 reference rows
Spatial layers 26 boundary layers as PMTiles — browse the folder ↗
Bathymetry GEBCO 2025 bathymetry ↗ · GEBCO Compilation Group (2025) GEBCO 2025 Grid (doi:10.5285/37c52e96-24ea-67ce-e063-7086abc05f29)
The release v2026.10.21 · 2026-10-21 · 26 tables · 384 M rows
CalCOFI integrated database v2026.10.212026-10-21
datasets
20
tables
26
rows
384 M
holdings
15