This website is dedicated to enabling and generating online products using data from the California Cooperative Oceanic Fisheries Investigations (CalCOFI.org). By streamlining data ingestion into the database, summary extraction of data from the database using a public-facing API, and making helper functions available in an R library, we can easily produce interactive applications and online reports of value to scientific and management audiences.
API
application programming interface (API) to generate summary tables and figures given input arguments <br> <a href='https://github.com/CalCOFI/api'> <img width=16 src='./images/icon_github.svg'> code</a>
Capstone App
visualization application designed by UCSB students for their undergraduate Capstone project <br> <a href='https://github.com/PK0207/CalCOFI22'> <img width=16 src='./images/icon_github.svg'> code</a>
Dashboard App
initial mockup of app showing survey map, timeseries plot and indicator scores <br> <a href='https://github.com/CalCOFI/apps/tree/main/dashboard'> <img width=16 src='./images/icon_github.svg'> code</a>
Documentation
documentation describing technical ecosystem <br> <a href='https://github.com/calcofi/docs'> <img width=16 src='./images/icon_github.svg'> code</a>
Hypoxia Story
scrollable story about hyopxia in the California Current Ecosystem and it's changing oxygen levels over the past 71 years <br> <a href='https://github.com/CalCOFI/hypoxia-story'> <img width=16 src='./images/icon_github.svg'> code</a>
Larval Analysis
larval analysis and visualization originally using CSVs (vs porting to database soon) <br> <a href='https://github.com/CalCOFI/larvae-cinms'> <img width=16 src='./images/icon_github.svg'> code</a>
Marine Mammal App
app for visualizing CalCOFI marine mammal visual observations and eDNA detections <br> <a href='https://github.com/CalCOFI/marmam-app'> <img width=16 src='./images/icon_github.svg'> code</a>
Oceano App
application to visualize and download CalCOFI oceanographic data in Map, Time series and Depth profile views <br> <a href='https://github.com/CalCOFI/apps/tree/main/oceano'> <img width=16 src='./images/icon_github.svg'> code</a>
R Library
documented helper functions to extract data from the API and visualize <br> <a href='https://github.com/CalCOFI/calcofi4r'> <img width=16 src='./images/icon_github.svg'> code</a>
SaferSeafood App
DDT Advisory For You and Your Seafood <br> <a href='https://github.com/CalCOFI/SaferSeafood'> <img width=16 src='./images/icon_github.svg'> code</a>
Server Software
server software setup using Docker <br> <a href='https://github.com/calcofi/server'> <img width=16 src='./images/icon_github.svg'> code</a>
Tile Server
vector tile server for quickly rendering "slippy" maps of complex/dense geometries (e.g. points, lines, polygons) <br> <a href='https://github.com/CalCOFI/server/blob/e9d6cb41a298af99424e038adaa6fe26ae16d107/docker-compose.yml#L57-L70'> <img width=16 src='./images/icon_github.svg'> code</a>
Visualization Gallery
gallery of visualizations (static and eventually dynamic) used in products (manuscripts, reports, applications) across partners <br> <a href='https://github.com/CalCOFI/viz-gallery'> <img width=16 src='./images/icon_github.svg'> code</a>
Workflows
scripts to explore and load data into the database <br> <a href='https://github.com/CalCOFI/workflows'> <img width=16 src='./images/icon_github.svg'> code</a>
Contacts:
- Program: Erin Sattherwaite (esatterthwaite@ucsd.edu)
- Technical: Ben Best (ben@ecoquants.com)