Appendix C — References
C.1 Works cited
Everything cited in the book, from refs/refs.bib and refs/packages.bib. The data itself is cited differently — the release and each source dataset have their own citations, generated from the record: see Cite this data.
Allaire, JJ, and Christophe Dervieux. 2024. Quarto: R Interface to
Quarto Markdown Publishing System. https://github.com/quarto-dev/quarto-r.
Chang, Winston, Joe Cheng, JJ Allaire, Carson Sievert, Barret Schloerke,
Yihui Xie, Jeff Allen, Jonathan McPherson, Alan Dipert, and Barbara
Borges. 2024. Shiny: Web Application Framework for r. https://shiny.posit.co/.
De Pooter, Daphnis, Ward Appeltans, Nicolas Bailly, Sky Bristol, Klaas
Deneudt, Menashè Eliezer, Ei Fujioka, et al. 2017. “Toward a New
Data Standard for Combined Marine Biological and Environmental Datasets
— Expanding OBIS Beyond Species Occurrences.”
Biodiversity Data Journal 5: e10989. https://doi.org/10.3897/BDJ.5.e10989.
Matarese, Ann C., Arthur W. Kendall, Deborah M. Blood, and Beverly M.
Vinter. 1989. “Laboratory Guide to Early Life History Stages of
Northeast Pacific Fishes.” NOAA Technical Report
NMFS 80. National Oceanic; Atmospheric Administration, National Marine
Fisheries Service. https://spo.nmfs.noaa.gov/sites/default/files/legacy-pdfs/tr80.pdf.
Millero, Frank J., Rainer Feistel, Daniel G. Wright, and Trevor J.
McDougall. 2008. “The Composition of Standard Seawater and the
Definition of the Reference-Composition
Salinity Scale.” Deep-Sea Research
Part I: Oceanographic Research Papers 55 (1): 50–72. https://doi.org/10.1016/j.dsr.2007.10.001.
Moser, H. Geoffrey, ed. 1996. The Early Stages of Fishes in the
California Current Region. CalCOFI Atlas
33. California Cooperative Oceanic Fisheries Investigations. https://calcofi.org/downloads/publications/atlases/CalCOFI_Atlas_33.pdf.
Schloerke, Barret, and Jeff Allen. 2024. Plumber: An API Generator
for r. https://www.rplumber.io.
C.2 R packages
- API: plumber (Schloerke and Allen 2024)
- docs: Quarto (Allaire and Dervieux 2024)
- apps: Shiny (Chang et al. 2024)