Reference

Read functions reading data, particularly from the CalCOFI API
get_cruises()	Get cruises from CalCOFI API
get_raster()	Get raster of interpolated values from CalCOFI API
get_timeseries()	Get timeseries summary from CalCOFI API
get_variables()	Get variables from CalCOFI API
Analyze functions for analyzing data
get_oceano_var_aoi()	Get oceanographic variable for area of interest
pts_to_contours_gam()	Interpolate points to contours using a Generalized Additive Model (GAM)
pts_to_rast_idw()	Interpolate points to raster using Inverse-Distance Weighting (IDW)
rast_to_contours()	Raster to contour polygons
Visualize functions for visualizing data
map_raster()	Map raster interactively
plot_depth()	Plot interactive depth of an oceanographic variable
plot_timeseries()	Plot interactive time series of an oceanographic variable
Data small lookup and example datasets not requiring API access
bottle_temp_depth	Bottle data of temperature with depth (m)
bottle_temp_lonlat	Bottle data of temperature in space (latitude, longitude)
cc_bottle	Bottle data in space and time
cc_grid	CalCOFI Grid for Extracting Effort
cc_grid_ctrs	CalCOFI Grid Centroids for Extracting Effort
cc_grid_zones	CalCOFI Grid Zones
cc_places	CalCOFI Places
stations	Oceanographic stations
Database functions specific to database (Admin only)
cc_db_catalog()	Show CalCOFI database catalog as interactive table
cc_db_connect()	Connect to the CalCOFI PostgreSQL database (Admin only)
create_index()	Create index in database
Other check for other functions or datasets not captured by above categories
buffer_transect()	Create Buffer Around Line Segment with Dateline Handling
get_env()	Retrieve Environmental Data from Database
get_sp()	Retrieve Species Larval Abundance Data from Database
get_taxon_children()	Retrieve Taxon Children from Database
map_env()	Create Interactive Environmental Map with Hexagonal Binning
map_sp()	Create Interactive Species Distribution Map with Hexagonal Binning
modal_data()	Data Selection Modal Dialog
modal_depth_profile()	Depth Profile Modal Dialog
plot_ts()	Create Dual-Panel Time Series Plot
prep_env_hex()	Aggregate Environmental Data into H3 Hexagons
prep_filter_summary()	Build Filter Summary for Display
prep_sp_hex()	Aggregate Species Data into H3 Hexagons
prep_splot()	Prepare Data for Species-Environment Scatterplot
prep_ts_env()	Build Environmental Time Series Data
prep_ts_sp()	Build Species Time Series Data
ui_placeholder()	Create Placeholder Message UI