Plot interactive time series of an oceanographic variable
plot_timeseries(
d,
fld_date,
fld_avg,
fld_sd,
title = "Temperature",
y_label = "Temperature (ºC)",
color = "red"
)data frame with data
unquoted name of field containing the date, e.g. year
unquoted name of field containing the average value, e.g. t_deg_c_avg
unquoted name of field containing the standard deviation, e.g. sd
quoted title, Default is "Temperature".
quoted label for y-axis. Default is "Temperature (ºC)".
quoted color. Should be one of grDevices::colors(). Default is "red".
interactive plot of dygraphs::dygraph()
# get variables
(v <- get_variables())
#> # A tibble: 4 × 6
#> category table_field plot_title plot_label plot_color color_palette
#> <chr> <chr> <chr> <chr> <chr> <chr>
#> 1 Oceanographic ctd_bottles.sali… Salinity Salinity … purple Purples
#> 2 Oceanographic ctd_bottles.o2sat Oxygen Sa… Oxygen pe… blue Blues
#> 3 Oceanographic ctd_bottles.t_de… Temperatu… Temperatu… red Reds
#> 4 Oceanographic ctd_bottles_dic.… Dissolved… DIC (µmol… brown YlOrBr
# get data for the first variable
(d <- get_timeseries(v$table_field[1]))
#> # A tibble: 71 × 4
#> year val_avg val_sd n_obs
#> <dbl> <dbl> <dbl> <dbl>
#> 1 1949 33.8 0.550 28081
#> 2 1950 33.9 0.515 38298
#> 3 1951 34.0 0.512 40459
#> 4 1952 33.8 0.469 31690
#> 5 1953 33.9 0.438 29789
#> 6 1954 33.9 0.469 18874
#> 7 1955 34.0 0.475 23248
#> 8 1956 34.1 0.536 14274
#> 9 1957 34.2 0.552 19072
#> 10 1958 33.9 0.420 24324
#> # ℹ 61 more rows
# plot time series with the first variable
with(v[1,],
plot_timeseries(
# data and columns (from d)
d, year, t_deg_c_avg, t_deg_c_sd,
# plot attributes (from v)
plot_title, plot_label, plot_color))
#> Error in dplyr::mutate(., `-sd` = { { fld_avg }} - { { fld_sd }}, `+sd` = { { fld_avg }} + { { fld_sd }}): ℹ In argument: `-sd = t_deg_c_avg - t_deg_c_sd`.
#> Caused by error:
#> ! object 't_deg_c_avg' not found