Show Flagged File Result — show_flagged_file • calcofi4db

Displays the result of flag_invalid_rows() with a GitHub link to the flagged file and summary statistics.

Usage

show_flagged_file(
  invalid_rows,
  output_path,
  description,
  repo = "CalCOFI/workflows",
  branch = "main"
)

Arguments

invalid_rows: Tibble of invalid rows that were flagged
output_path: Path to the flagged CSV file
description: Description of what was flagged
repo: GitHub repository (default: "CalCOFI/workflows")
branch: Git branch (default: "main")

Value

HTML string with flagged file summary and link

Examples

if (FALSE) { # \dontrun{
invalid_stages <- validate_egg_stages(con, "egg_stage", "stage")
if (nrow(invalid_stages) > 0) {
  output_path <- flag_invalid_rows(invalid_stages, "data/flagged/invalid_egg_stages.csv", "Invalid egg stages")
  show_flagged_file(invalid_stages, output_path, "Invalid egg stages")
}
} # }