Tag the hand-picked rows of the registry as source = "manual"

The registry never carried a literal "manual": every fetched row was stamped source = "worms" whether the value was auto-filled or hand-picked. The two are told apart by construction — ensure_taxon_common() only ever auto-fills the one candidate WoRMS offered — so a filled row whose value is not that single candidate was necessarily a human edit. This writes that reconstruction into the registry once (it is idempotent), and ensure_taxon_common() keeps the tag from then on. apply_taxon_common() reads it as rank 1 of the precedence.

Usage

mark_taxon_common_manual(cache_csv, verbose = TRUE)

Arguments

cache_csv

path to the registry

verbose

report how many rows were tagged

Value

the number of rows newly tagged manual, invisibly