Check a taxa.json against the release it was built from

One row per check with an ok flag, so a release chunk can print the table whether or not it passes. The counts are re-measured against obs_bio when con is given (the release's own connection, or a promoted release read back); without it the arithmetic that lives inside the record is still checked.

Usage

check_taxa_catalog(record, con = NULL, dataset_record = NULL)

Arguments

record

from build_taxa_catalog() (or a taxa.json path or URL)

con

a DBI connection holding taxon and obs_bio; NULL to check only what the record can prove about itself

dataset_record

the datasets.json record (or its path) whose datasets[] every dataset_key must appear in; NULL to skip that check

Value

A tibble: check, level, ok, expected, observed, detail.

See also

assert_taxa_catalog(), taxa_catalog_checks()